FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489470
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25620.5234232945839378No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19020.3885835699838601No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9720.19858213986556889No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9470.19347457453980837No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9410.19224875886162585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9360.19122724579647374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8050.16446360348948863No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC7170.1464849735428116No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG6760.13810856640856436No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6100.1246245939485566No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5740.11726969987946145No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5560.11359225284491388No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5130.10480724048460581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)