FastQCFastQC Report
Wed 31 May 2023
EGAF00007958447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483072
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11080.22936539480657128No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7600.15732644409115No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6000.12420508744038156No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5190.10743740063593006No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5120.10598834128245893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)