FastQCFastQC Report
Wed 31 May 2023
EGAF00007958453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543007
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28910.5324056595955485No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17830.3283567246831072No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7020.12928010136149257No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.1267018657218047No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6420.1182305200485445No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5630.10368190465316283No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5460.10055118994782757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)