FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556709
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28970.5203795878996028No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21330.38314451535721533No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19440.34919500133822157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13320.23926324165767032No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12790.22974300756768798No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12150.2182468758363885No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7600.1365165643091813No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6000.1077762349809326No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5580.10023189853226731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)