FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529054
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32780.6195964873150944No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28750.5434227886000295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19280.3644240474507328No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17910.3385287702200532No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15630.2954329803762943No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14850.28068968385079784No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10320.19506515402964536No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9850.18618137278992314No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9320.17616349181747043No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9160.17313922586352243No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9080.17162709288654845No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6990.1321226188631028No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6530.12342785424550234No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5840.11038570731910163No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5600.10584930838817967No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5580.10547127514393617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)