FastQCFastQC Report
Sun 21 May 2023
EGAF00007958460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479024
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11160.23297371321687432No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11080.2313036507565383No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9940.20750526069675004No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8900.18579444871238182No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7670.1601172383847156No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6110.12755102040816327No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6110.12755102040816327No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5490.11460803634055913No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5430.11335548949530712No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5290.11043288018971908No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5010.10458766157854303No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4890.10208256788803902No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4830.100830021042787No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4800.10020374762016099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)