FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408845
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11320.2768775452799961No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9110.22282283016791204No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6480.15849527326982107No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5380.13159021144932675No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5000.12229573554770146No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4550.11128911934840831No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4500.11006616199293132No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4230.10346219227335544No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4210.10297300933116461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)