FastQCFastQC Report
Wed 31 May 2023
EGAF00007958465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408845
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57701.4112927882204747No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12900.31552299771306974No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12050.2947327226699605No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9090.22233364722572124No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5050.12351869290317848No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4980.12180655260551065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4870.1191160464234612No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4840.11838227201017501No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4540.11104452787731292No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4400.10762024728197728No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4400.10762024728197728No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4290.10492974109992785No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4140.10126086903349679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)