FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528597
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26120.49413825655461535No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11760.22247572347175634No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10710.20261181959034957No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9280.1755590743042431No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7730.14623616857454733No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7550.1428309279091633No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.10840016118139148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)