FastQCFastQC Report
Wed 8 May 2024
EGAF00007958470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452443
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9170.20267746434357475No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8670.19162634851240928No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6750.14919006372073387No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5430.12001511792645704No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4920.10874297977866824No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4590.10144924333009904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)