FastQCFastQC Report
Sun 21 May 2023
EGAF00007958472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434038
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15610.3596459296190656No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15020.34605264976799266No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12730.2932922923799298No Hit
GTCAGAGCTTTTGGTGGTGTTGATAGAGTTCAGAACCGCCTGCG10880.25066929623673506No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10720.24698298305678304No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9240.2128845861422272No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7830.18039895124390032No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6990.1610458070491524No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG6990.1610458070491524No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6900.15897225588542938No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6560.1511388403780314No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6440.14837410549306743No Hit
CAGACCTTTGCCTTCATCCATGTCTTCGGTGGCCGGGGTGGTGT6160.14192305742815145No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG6030.13892792796944045No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4950.11404531400476456No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4690.10805505508734259No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4460.1027559798911616No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4400.1013736124486796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)