FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434038
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36380.8381754592915828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22670.522304498684447No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14010.3227827978195458No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12500.28799321718374893No Hit
GTCGCTGGCCTGATCGTGGGCGCAGCGACTA11480.26449297066155497No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9650.22233076366585414No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9040.20827669466728718No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA8220.18938433962003326No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7620.17556066519521332No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7000.16127620162289938No Hit
GAACCGATCTACGCTACCATCGACGACCTGG6760.1557467318529714No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6590.15183002409927243No Hit
GACGATGGCGAAACCACTACCGTAACCGTTA6490.14952607836180243No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6220.14330542487063344No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5290.12187872951216253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4870.11220215741478856No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG4770.10989821167731859No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4660.1073638713661016No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4380.10091282330118562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)