FastQCFastQC Report
Wed 31 May 2023
EGAF00007958479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497676
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41860.8411094768483913No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29240.587530843359937No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22590.4539097726231524No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG21380.42959676576728634No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21040.42276501177472897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16590.3333494080486099No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG15360.30863453331082874No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15360.30863453331082874No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14360.28854113921507163No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG14120.28371872463208997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13670.2746766972889993No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12590.25297583166558163No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10910.21921892958470973No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9060.18204615050755912No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8900.17883120745223802No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7660.15391539877349922No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA7450.14969578601339023No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG7110.14286403202083284No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG7020.14105562655221468No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6980.1402518907883844No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6930.13924722108359655No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC6760.13583134408731787No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5750.11553701605060321No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5690.11433141240485777No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5500.11051366752666393No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC5450.10950899782187608No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5260.10569125294368224No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5170.1038828474750641No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5000.10046697047878539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)