FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541915
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11730.21645461004032No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9370.17290534493416865No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8600.15869647453936503No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7610.14042792688890324No Hit
TGCCAGACCGCGGGTGGCACGTGGTTCGCGCGGCGGACGAGGCT7300.13470747257411217No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7220.13323122629932738No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7200.1328621647306312No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6380.11773064041408708No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6370.11754610962973898No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6090.1123792476679922No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5780.10665879335320114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)