FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541915
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45520.8399841303525459No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17730.3271730806491793No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.2129485251377061No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10310.19025123866288993No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8590.15851194375501693No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8070.1489163429689158No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7920.1461483812036943No Hit
GAACCGCGTGTACCGCGTGAACCTCGTGAAC7790.14374948100716903No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA7730.1426422963010804No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6660.12289750237583384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6610.12197484845409336No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6460.11920688668887187No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6340.11699251727669469No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5900.10887316276537834No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5570.10278364688189107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)