FastQCFastQC Report
Sun 21 May 2023
EGAF00007958490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456442
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10530.23069743800964854No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10200.22346760377002992No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9680.2120751376954794No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9660.21163696592338127No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7930.1737351076368958No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7570.16584801573913005No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7510.16453350042283577No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7290.15971361092975667No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6620.1450348565644704No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5740.1257552985921541No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5480.12005906555487883No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5200.11392466074550546No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4800.10516122530354349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)