FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456442
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24380.5341313901875813No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10460.2291638368073052No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9900.21689502718855846No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9740.21338965301177368No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8020.17570688061133724No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7840.1717633346624544No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7670.16803887459962055No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7300.15993269681580574No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6770.14832114485520612No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6200.13583324935041036No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5880.12882250099684078No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5490.12027815144092786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5270.11545826194784879No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5010.10976202891057353No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5000.10954294302452448No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4700.102970366443053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)