FastQCFastQC Report
Wed 31 May 2023
EGAF00007958494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422159
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17480.4140620003363661No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10990.2603284544448893No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10260.2430363915017801No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9420.2231386752384765No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8360.1980296523347838No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6720.1591817301064291No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6320.14970662712390356No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6210.14710097380370904No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5610.13288831932992073No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5310.12578199209302654No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5150.12199195090001635No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5080.12033380787807438No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5010.1186756648561324No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4570.10825305157535431No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4430.10493676553147036No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4350.10304174493496526No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT4330.10256798978583899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)