FastQCFastQC Report
Sun 21 May 2023
EGAF00007958500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461500
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16440.35622968580715064No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12480.2704225352112676No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11170.24203683640303358No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11140.24138678223185267No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10950.2372697724810401No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9730.21083423618634883No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8840.19154929577464788No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8290.17963163596966414No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7680.1664138678223185No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7590.16446370530877574No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6830.14799566630552546No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6810.14756229685807148No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6740.14604550379198267No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6650.14409534127843987No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6590.14279523293607801No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6470.14019501625135428No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6230.13499458288190683No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5670.12286023835319611No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5530.1198266522210184No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5320.1152762730227519No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5290.11462621885157097No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5110.11072589382448539No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4730.10249187432286025No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4690.10162513542795235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)