FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461500
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17010.36858071505958834No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14120.3059588299024919No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13090.28364030335861323No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12580.27258938244853737No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11650.2524377031419285No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11410.24723726977248103No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10830.23466955579631638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9830.21300108342361865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9370.20303358613217767No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8540.18504875406283858No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8400.1820151679306609No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8180.1772481040086674No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7930.17183098591549295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7680.1664138678223185No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7660.16598049837486456No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7420.1607800650054171No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7280.15774647887323942No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7210.1562296858071506No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6260.13564463705308777No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6000.13001083423618637No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5950.12892741061755145No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5810.12589382448537378No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5780.12524377031419284No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5320.1152762730227519No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5140.11137594799566632No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5090.11029252437703141No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4740.10270855904658723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)