FastQCFastQC Report
Wed 31 May 2023
EGAF00007958502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439992
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16080.36546119020345824No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11480.2609138347969963No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11170.2538682521500391No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10360.23545882652411862No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9820.2231858761068383No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9810.22295859924725903No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8670.19704903725522283No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8100.1840942562592047No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7980.18136693394425352No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7110.16159384716085745No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7020.15954835542464407No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6760.1536391570755832No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6530.14841178930526008No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6210.1411389297987236No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6210.1411389297987236No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6080.13818433062419316No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5890.13386607029218714No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5670.12886597938144329No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5410.1229567810323824No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5270.1197749049982727No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5000.11363842978963255No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4700.10682012400225459No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4590.10432007854688267No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4510.10250186367024856No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4440.10091092565319369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)