FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479930
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29810.6211322484528994No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14820.30879503260892216No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10070.2098222657470881No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9620.20044589836017754No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8560.17835934407101037No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.17815098035130122No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8020.16710770320671764No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7600.15835642697893443No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6620.13793678244744023No Hit
AAAGTTCCGGTGACCATGACCCGTTACCGCT6580.13710332756860377No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6570.13689496384889463No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6380.13293605317442125No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5980.1246015043860563No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5770.1202258662721647No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5760.12001750255245557No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5740.11960077511303732No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5600.11668368303710958No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5460.11376659096118183No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5150.10730731565019899No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5120.1066822244910716No Hit

[OK]Adapter Content

Adapter graph