FastQCFastQC Report
Wed 31 May 2023
EGAF00007958506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425314
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20700.4866992386801281No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT19230.4521365391216842No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17670.415457755916805No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16180.38042481554804214No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15250.3585586178682103No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14580.342805550722525No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14010.3294036876284345No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA13280.3122398980517923No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12930.30401068387121044No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12560.2953112288803096No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12100.28449569024297344No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT11240.26427533539925796No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11170.26262949256314155No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8540.20079282600619774No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7860.184804638455353No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7760.18245343440375816No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7480.17587006305929265No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7090.16670036725807286No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6010.14130736350084877No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5780.1358995941821807No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5690.13378351053574536No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA5660.1330781493202669No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5650.1328430289151074No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5290.12437869432936606No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4940.11614948014878419No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4900.11520899852814626No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4770.112152433261073No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4380.1029827374598532No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4270.10039641300309887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)