FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425314
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28300.6653907466013346No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26810.6303578062325718No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24760.5821581231748778No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19640.461776475733223No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18090.4253328129335032No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17540.41240119064973174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16980.3992344479608007No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16040.3771331298758094No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15450.3632610259714No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC14180.3334007345161457No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13400.3150613429137061No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12360.29060882077711997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12040.28308496781201653No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG11590.2725045495798398No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9550.22453998692730548No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9370.22030781963443483No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8350.19632553830816762No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8240.19373921385141332No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7470.17563494265413318No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7110.16717060806839185No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6460.15188778173302547No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6410.15071217970722808No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6180.14530441038855998No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6060.14248296552664622No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5700.13401863094090485No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA5660.1330781493202669No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5090.11967628622617643No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4390.10321785786501267No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC4280.10063153340825837No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4280.10063153340825837No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4260.1001612925979394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)