FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458791
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64181.3988940497960944No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51171.1153226632606132No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26000.5667068447288635No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23480.5117798736243736No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC16180.35266602875819275No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13910.30318816192994197No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13830.30144444856154545No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13670.2979570218247525No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13370.29141809669326557No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12810.27921210311449No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11960.2606851485752772No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11820.2576336501805833No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11050.24085040900976698No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10860.23670908975982527No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10640.2319138779967349No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10170.22166956195740542No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9920.21622045768116635No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9200.20052703736559785No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8610.18766715127367364No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7740.16870426839236166No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7730.1684863042213121No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7090.15453659727414007No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5560.12118807910355696No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5540.12075215076145782No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5400.11770065236676396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5320.11595693899836745No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4900.1068024438142858No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG4830.10527669461693887No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4760.10375094541959191No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4700.10244316039329454No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4600.10026351868279892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)