FastQCFastQC Report
Wed 31 May 2023
EGAF00007958511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499156
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57341.148739071552781No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29780.5966070727387831No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28570.5723661540680669No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25060.5020474561059067No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC17660.35379720968995665No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16330.3271522329692521No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15260.30571604869018904No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15240.3053153723485243No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14910.29870421271105624No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14460.28968899502359985No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14210.2846805407527907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12960.25963826939874507No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12260.24561459744047953No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12220.24481324475715008No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12150.2434108775613235No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11580.23199160182387873No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10970.21977097340310442No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10030.20093918534486213No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9200.18431111716577583No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8050.16127222752005385No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8030.1608715511783891No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7980.1598698603242273No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6580.1318225164076962No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6400.12821642933271363No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5920.1186001971327601No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG5410.10838295042030947No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5290.1059788923703211No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5210.10437618700366218No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5130.10277348163700326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)