FastQCFastQC Report
Wed 31 May 2023
EGAF00007958512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468096
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11870.25358046212742685No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10190.21769038829641785No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8580.1832957342083675No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8360.17859584358764014No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6620.14142398140552365No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6400.13672409078479628No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5660.1209153677878042No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5540.1183517910855893No Hit
GACGGAGCCGGACTGGGTGAAATCGATGTTGTCGTCACCCTTCA5410.11557458299152311No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5030.10745659010117582No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5020.10724295870932457No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4970.10617480175006835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)