FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452765
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG19110.4220732609631928No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17630.3893852219142381No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14510.3204753017569821No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14430.31870838072730884No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13510.29838878888606674No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12740.2813821739754619No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12600.27829006217353375No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11600.25620354930261835No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11040.24383510209490578No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10950.24184731593652337No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10530.23257098053073888No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9830.21711042152109816No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9010.19899948096694753No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8720.19259439223438207No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8540.1886188199176173No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7130.15747683676962662No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6790.1499674223935154No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6410.14157454750256757No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6170.13627378441354787No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6150.13583205415612956No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6090.13450686338387463No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6030.1331816726116197No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5840.1289852351661458No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5760.12721831413647255No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5540.12235928130487118No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5400.11926716950294303No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT5230.1155124623148874No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5210.11507073205746911No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5120.11308294589908673No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5070.11197862025554095No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4920.10866564332490365No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4840.10689872229523041No Hit
GGCCTGTTCGTGGGAGGATGCCGCCTGGCCAGAAGAGCTGTTCT4580.10115622894879242No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4550.10049363356266497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)