FastQCFastQC Report
Sun 21 May 2023
EGAF00007958515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452765
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62151.3726767749273905No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21360.47176791492275244No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20020.4421719876757258No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18760.4143429814583725No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16410.36243967621172135No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16310.3602310249246298No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16270.35934756440979315No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13910.3072233940344329No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12920.28535774629222665No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12600.27829006217353375No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12120.26768853599549436No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11800.26062085187680145No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11320.25001932569876206No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT10930.24140558567910506No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10820.23897606926330436No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8840.1952447737788919No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8310.18353892195730676No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7900.17448345168023147No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7450.16454452088831953No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6720.1484213664925513No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6580.1453292546906232No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6480.14312060340353164No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6360.14047022185902178No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6230.13759897518580277No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5800.12810177465130917No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG5660.12500966284938103No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5580.1232427418197078No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5490.12125495566132541No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5410.11948803463165218No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5220.11529159718617826No Hit
GGCTCCGCGCAAGAACAGTCTCGCGATGGCA5080.1121994853842501No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4930.1088865084536128No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4900.10822391306748533No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4860.10734045255264872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)