FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440385
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14820.33652372356006677No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14670.3331176129977179No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12300.279301066112606No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11700.2656766238632106No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10920.24796484893899656No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9960.2261657413399639No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9900.22480329711502436No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9430.21413081735299797No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9000.20436663374093123No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7900.17938848961703963No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7790.17689067520465046No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7230.16417452910521474No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7000.15895182624294651No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6590.14964179070585965No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6490.1473710503309604No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6320.1435107916936317No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6090.13828808883136345No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5790.13147586770666575No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5780.13124879366917586No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5710.12965927540674638No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5700.12943220136925646No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5440.12352827639451844No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5360.12171168409459904No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5190.11785142545727034No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5160.11717020334480058No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4620.10490820532034471No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4550.10331868705791523No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4500.10218331687046561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)