FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007958519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440385
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63021.4310205842614985No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24350.5529252812879639No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20080.45596466727976653No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15000.34061105623488536No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG12420.28202595456248514No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11660.2647683277132509No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10610.2409255537768089No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10130.23002599997729262No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9880.2243491490400445No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9500.2157203356154274No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9230.20958933660319948No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7710.1750740829047311No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7690.17461993482975124No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7620.17303041656732177No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7440.16894308389250315No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7040.1598601223929062No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6950.1578164560554969No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6900.15668108586804727No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6860.15577278971808758No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6440.1462356801435108No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5900.13397368211905492No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5860.13306538596909523No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5660.12852390521929674No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5640.1280697571443169No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5380.1221658321695789No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5290.12012216583216957No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5210.11830557353225019No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5190.11785142545727034No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4830.10967676010763308No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4610.10468113128285478No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4540.10309161302042531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)