FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425044
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60691.4278521753042037No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7740.18209879447774818No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6240.14680833043167296No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4980.11716434063296975No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4610.10845935950160454No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4480.10540085261761134No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4300.10116599693208234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)