FastQCFastQC Report
Wed 31 May 2023
EGAF00007958522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501031
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19860.3963826589572302No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17680.3528723771582996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13960.27862547427205103No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13210.26365634062563No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12520.24988473767092256No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11550.23052465815488463No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10860.21675305520017724No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9230.18422013807528875No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9120.18202466514048032No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8650.1726440080553898No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8350.16665635459682135No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG8300.1656584123537266No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT8040.16046911268963396No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7890.15747528596034976No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6790.1355205566122655No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6790.1355205566122655No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6580.1313291991912676No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6420.12813578401336445No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6330.12633948797579392No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6300.12574072262993707No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5550.110771588983516No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5340.1065802315625181No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5230.10438475862770966No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5170.10318722793599597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)