FastQCFastQC Report
Sun 21 May 2023
EGAF00007958523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501031
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49220.9823743441024607No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23720.47342380012414403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23110.4612489047583882No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20920.4175390345108386No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14830.29598966930189946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14140.2822180663471921No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13420.26784769804662784No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13340.2662509904576763No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10760.21475717071398776No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9800.19559667964656877No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9720.19399997205761718No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8950.1786316615139582No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8740.1744403040929603No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8590.1714464773636761No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA8510.16984976977472452No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7860.15687652061449292No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7600.15168722095040027No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.14569956749183186No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7190.14350409455702343No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7010.13991150248188236No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6810.1359197335095034No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6650.13272631833160023No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6530.13033125694817288No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5770.11516253485313284No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5600.11176953122661072No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5370.10717899690837493No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5290.10558228931942334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)