FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475823
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48241.013822366720398No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20910.43944912288813276No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19150.4024605788286821No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16340.3434050056428546No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12100.25429624040872345No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10450.2196194803529884No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9030.1897764504868407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8290.17422444900729894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7510.15783179879913328No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6940.145852554416243No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6870.14438141914115124No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6470.13597493185491244No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5890.12378552528986618No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5760.12105341692183859No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5680.11937211946459084No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5210.10949449690326024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)