FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491413
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11400.23198409484486573No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10820.22018139528258307No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10810.21997790046254373No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9520.19372706867746683No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7650.15567353733010728No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7090.14427782740790335No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6880.14000443618707686No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG6310.12840523144483357No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5740.11680602670259027No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5670.1153815629623148No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5540.11273613030180316No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5510.1121256458416851No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5220.10622429606054377No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG4940.10052644109944181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)