FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491413
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50231.0221544810576846No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23010.4682415809105579No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11690.23788544462600703No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10910.22201284866293727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10560.21489052996155983No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9930.2020703562990804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8940.18192436911518417No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8860.18029641055486934No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6690.1361380346063291No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT6220.12657377806447936No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6210.12637028324444No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6000.12209689202361354No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5890.11985844900318063No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5670.1153815629623148No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5340.10866623390101604No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5020.10215439965975666No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4950.10072993591948116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)