FastQCFastQC Report
Tue 8 Aug 2023
EGAF00007958606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96180217
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATC1610440.1674398384857044No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA1586750.16497675400337264No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1549440.16109757789379908No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG1169930.12163935957848797No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGAGGT968520.10069846276183803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)