FastQCFastQC Report
Tue 8 Aug 2023
EGAF00007958607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96180217
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC2463040.25608592669322006No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG2225920.23143220814317772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2001560.20810516574317983No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT1837790.19107775562619078No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC1371500.142596891832756No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG1138740.1183964889578072No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA1105120.11490096762830136No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG1098670.11423035154932121No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT1093770.11372089127226652No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1052610.10944142494500714No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1023600.10642521216187317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)