FastQCFastQC Report
Tue 8 Aug 2023
EGAF00007958697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92225749
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCACTCATCGACCT1730590.18764716131500325No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1718360.18632106744939528No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1697690.18407982785805296No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1570440.1702821627396054No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC1298980.14084786668417298No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG1262010.1368392248026091No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG1146370.12430042720498805No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC1006820.10916907814974752No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG960830.10418240138120212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)