FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481706
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45180.9379164884805254No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT35060.7278298381170257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18810.390487143610418No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8840.18351442581159463No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8640.17936251572535947No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8360.17354984160463022No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8250.17126629105720087No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8060.16732197647527744No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT7990.16586880794509515No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7980.16566121244078338No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7680.15943334731143063No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7540.156527010251066No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5970.1239345160741199No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5640.11708386443183186No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5580.1158382914059613No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5400.11210157232834966No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5280.10961042627660855No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC5220.108364853250738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)