FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511514
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT36880.7209968837607572No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18200.3558064881899615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10080.1970620549975172No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10040.196280062715781No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9660.1888511360392873No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9210.18005372286975527No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9140.17868523637671696No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8780.17164730584109136No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8560.16734634829154235No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8260.16148140617852103No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT8060.1575714447698401No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7920.1548344717837635No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6590.12883322841603553No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6390.12492326700735465No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5940.11612585383782262No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC5810.11358437892218004No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5620.10986991558393319No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5310.10380947540047779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)