FastQCFastQC Report
Wed 31 May 2023
EGAF00007958773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487616
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43250.8869684341777135No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT34830.7142915736973356No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18090.37098864680404253No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9370.19215940412127575No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9050.18559686310539442No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8970.18395622785142407No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8360.17144638403990023No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8320.17062606641291508No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8130.16672955768473552No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT7800.1599619372621079No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7710.15811622260139124No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6810.13965907599422497No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5930.12161208820055125No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5860.1201765323533272No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5840.11976637353983463No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC5560.11402415015093845No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5320.10910224438902742No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5230.1072565297283108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)