FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451014
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC36960.8194867565086672No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT33610.7452096830697051No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA27210.6033072144101956No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25750.570935713747245No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23130.5128443906397584No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22690.5030885959194171No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22620.5015365376684537No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22160.49133729773355145No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT18700.41462127561450424No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT18360.4070827069669678No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC17240.3822497749515536No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17180.38091943930787076No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16220.3596340690089443No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15920.3529823907905298No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14820.3285929039896766No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13860.30730753369075015No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC12820.2842483825335799No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG12450.276044646064202No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT12040.26695401916570216No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11530.2556461661943975No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT11170.2476641523323001No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10870.2410124741138856No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC10760.23857352543380028No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9920.21994882642223965No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9560.21196681256014224No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9240.2048716891271668No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9010.19977206915971565No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8820.1955593396213865No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7190.15941855463466767No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6890.15276687641625314No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6820.15121481816528975No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT6760.14988448252160688No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6510.1443414173395948No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6370.14123730083766803No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6320.14012868780126558No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6270.13902007476486317No Hit
TTCAGACGGTGGGGTGTCCTCGGACTGGCCCCAGTCGCTCGGGC6020.13347700958285108No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5540.12283432443338786No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5540.12283432443338786No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5460.12106054357514401No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT5410.11995193053874159No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5240.11618264621497337No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4910.10886580017471742No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4760.10553996106551017No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG4690.10398790281454678No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4600.10199239934902242No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA4600.10199239934902242No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4540.10066206370533952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)