FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455589
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC36680.8051116247319403No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT34450.7561639986918034No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA28200.6189789481308812No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25540.5605929906121526No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA23310.5116453645720155No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22550.4949636624238074No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22550.4949636624238074No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22190.4870618035114983No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17930.39355647304917374No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17920.3933369769682762No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17770.3900445357548141No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC17740.38938604751212164No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16360.35909558834827005No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15980.35075473727416595No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15740.34548683133262653No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14190.31146493879351783No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC12420.27261413247466465No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG12020.2638342892387657No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11310.24825006749504488No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11160.24495762628158274No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11030.24210417722991556No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT10840.23793375169286354No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9840.21598414360311596No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9620.2111552298233715No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9230.20259488266836995No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9120.20018042577849773No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8580.18832763741003405No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7890.17318240782810823No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7690.16879248621015872No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7010.1538667527091304No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT6720.14750136636310357No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6680.14662338203951367No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6570.14420892514964145No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6400.14047749177438437No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6180.13564857799463992No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6150.13499008975194748No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6010.13191714461938284No Hit
TTCAGACGGTGGGGTGTCCTCGGACTGGCCCCAGTCGCTCGGGC5840.12818571124412576No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT5650.12401528570707371No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5220.11457695422848226No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5130.11260148950040497No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5080.11150400909591758No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4950.1086505600442504No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT4950.1086505600442504No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4800.10535811883078827No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4760.10448013450719837No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG4720.10360215018360847No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4700.10316315802181351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)