FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432449
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC35680.8250683895673248No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31790.7351155858841157No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26440.6114015756771318No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25580.5915148375877849No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22860.5286172473517109No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22000.508730509262364No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21540.49809341679596897No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21030.4863001186267051No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17970.41554032961112175No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17470.4039782725824317No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16060.3713732717615256No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16050.3711420306209518No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15510.35865500902996655No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15160.3505615691098835No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14800.34223688804922664No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13590.3142567100397966No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC12190.28188295035946437No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11760.27193958131479085No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11400.263614900254134No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10900.25205284322544397No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10700.2474280204139679No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT10030.23193486399552318No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9580.2215290126697021No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9250.21389805503076662No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8880.20534213282953598No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8810.20372344484551938No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8690.20094855115863372No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8490.1963237283471577No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7190.16626238007256347No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT6640.15354411734100437No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6470.14961301795124973No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6420.14845681224838073No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6360.14706936540493792No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6300.14568191856149512No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6140.14198206031231428No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5870.13573854951682163No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5820.13458234381395262No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5790.13388862039223123No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT5700.131807450127067No Hit
TTCAGACGGTGGGGTGTCCTCGGACTGGCCCCAGTCGCTCGGGC5650.13065124442419798No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5350.12371401020698394No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5100.1179329816926389No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4860.11238319431886765No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4590.10613968352337501No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4490.103827272117637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)