FastQCFastQC Report
Sun 21 May 2023
EGAF00007958781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456399
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17050.3735766292213611No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15260.33435656081630327No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15080.3304126433230572No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13290.2911925749179994No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9390.20574102923100182No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9300.20376907048437878No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9120.19982515299113274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.15972865847646467No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7140.1564420605654263No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6650.14570584072270099No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6390.14000907101023446No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.1367224730991961No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5710.12510982714686053No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4880.10692398537244822No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4800.10517113315322776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)