FastQCFastQC Report
Wed 31 May 2023
EGAF00007958783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462467
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17310.37429697686537633No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15290.3306181846488506No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14040.30358922906931735No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13790.29818343795341073No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9810.2121232433881769No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9660.2088797687186329No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9440.20412267253663505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7670.16584967143601598No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7530.16282242841110825No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7090.15330823604711255No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6730.14552389684020697No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6150.13298246145130355No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5810.1256305855336705No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5100.11027813876449562No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4920.10638596916104283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)