FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437152
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39520.9040333796940195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16790.3840769343386282No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14460.3307773955054535No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13870.3172809457579972No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13290.30401324939609103No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9670.22120452382695263No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8260.18895029646438766No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7270.16630371129492716No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6520.1491472073786692No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6420.14685967352316814No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6080.13908205841446453No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5720.13084693653466073No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5240.11986677402825563No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4730.1082003513652002No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4390.1004227362564966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)