FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427231
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29150.6823006757468443No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24410.571353670496757No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16430.38456947178458495No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14310.33494760445754174No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG13050.3054553625556198No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12570.29422022278345905No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12510.292815830311939No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9960.23312915027233508No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9890.231490692388895No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9630.22540499167897463No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9010.21089293613993365No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8830.2066797587253734No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7270.17016555446585102No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7250.169697423642011No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7070.16548424622745073No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6860.1605688725771304No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6510.15237658315992988No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6070.1420777050354492No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5250.12288434125800796No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5090.11913929466728772No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4600.10767008948320698No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4590.10743602407128697No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4500.10532943536400681No Hit
CCGAAAGGCTCTAACTATTGGCGTAACCGTG4290.1004140617136865No Hit

[OK]Adapter Content

Adapter graph